![]() PyImSegm - Image segmentation - general superpixel segmentation and center detection and region growing.PartSeg - A GUI and a library for segmentation algorithms.MorpholibJ - Collection of mathematical morphology methods and plugins for ImageJ.GPim - Gaussian processes and Bayesian optimization for images and hyperspectral data.EBImage - Image processing toolbox for R.DeepSlide - A sliding window framework for classification of high resolution microscopy images.DeepCell - Deep learning library for single cell analysis.CLIJ2 - GPU-accelerated image processing library for ImageJ/Fiji, Icy, MATLAB and Java.Cellshape - 3D single-cell shape analysis of cancer cells using geometric deep learning.Cellpose - A generalist algorithm for cell and nucleus segmentation.AtomAI - PyTorch-based package for deep/machine learning analysis of microscopy data.Ark-Analysis - A pipeline toolbox for analyzing multiplexed imaging data.Scikit-image - Collection of algorithms for image processing.PYME - Open-source application suite for light microscopy acquisition, data storage, visualization, and analysis.OpenCV - Open source computer vision and machine learning software library.Napari - Fast, interactive, multi-dimensional image viewer for Python.ImagePy - Open source image processing framework written in Python.ImageJ2 - A Rewrite of ImageJ for multidimensional image data, with a focus on scientific imaging.ImageJ - Public domain software for processing and analyzing scientific images.Ilastik - Simple, user-friendly tool for interactive image classification, segmentation and analysis.Icy - Open community platform for bioimage informatics, providing software resources to visualize, annotate and quantify bioimaging data.Flika - An interactive image processing program for biologists written in Python.Fiji - A "batteries-included" distribution of ImageJ - a popular, free scientific image processing application.CellProfiler Analyst - Open-source software for exploring and analyzing large, high-dimensional image-derived data.CellProfiler - Open-source software helping biologists turn images into cell measurements.Cell-ACDC - A GUI-based Python framework for segmentation, tracking, cell cycle annotations and quantification of microscopy data.BioImageXD - Free, open source software package for analyzing, processing and visualizing multi-dimensional microscopy images.3D Slicer - Free, open source and multi-platform software package widely used for medical, biomedical, and related imaging research.Image restoration and quality assessment.Electron and super resolution microscopy.We will also continue tutorials, which will now be collected at broad.io/COBAWorkshops - you can check out the previous video intros to CellProfiler and CellProfiler-Analyst there now! For now, we plan to do most of these still as live to allow possibility for questions during the stream, but this week’s video introduction to Distributed-CellProfiler will be pre-taped and uploaded this Friday.Tools and resources for biological image analysis.īiological image analysis aims to increase our understanding of biology through the use of various computational techniques and approaches to obtain valuable information from images. We definitely therefore advise you to already have a specific question in mind before you sign up, to make sure to make best use of the time you have! We’ll announce for each session when registrations are open at broad.io/imagingofficehours - signups for this Friday 4/27 are live now!ĭue to the high demand, we are implementing a one signup per year policy- we wish we had capacity to help everyone as often as needed, but there are thousands of users and only a handful of us. Given the success of previous office hour events, our team is going to continue offering these at regular intervals (currently planned for every 2 weeks), sponsored by COBA, the Center for Open Bioimage analysis.
0 Comments
Leave a Reply. |
Details
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |